| 4 | Vratislav Lokvenc | Second Group Stage | UEFA Champions League 99/00 |
| 4 | Libor Sionko | First Group Stage | UEFA Champions League 01/02 |
| 3 | Milan Fukal | Second Group Stage | UEFA Champions League 99/00 |
| 3 | Vladimir Labant | First Group Stage | UEFA Champions League 99/00 |
| 2 | Horst Siegl | Group Stage | UEFA Champions League 97/98 |
| 2 | Josef Obajdin | Group Stage | UEFA Champions League 97/98 |
| 2 | Karel Poborsky | Group Stage | UEFA Champions League 03/04 |
| 2 | Tomas Rosicky | First Group Stage | UEFA Champions League 99/00 |
| 2 | Jiri Novotny | First Group Stage | UEFA Champions League 99/00 |
| 2 | Marek Kincl | First Group Stage | UEFA Champions League 01/02 |
| 2 | Jiri Jarosik | First Group Stage | UEFA Champions League 01/02 |
| 2 | Rastislav Michalik | First Group Stage | UEFA Champions League 01/02 |
| 2 | Tomas Rosicky | First Group Stage | UEFA Champions League 00/01 |
| 2 | Jiri Jarosik | First Group Stage | UEFA Champions League 00/01 |
| 1 | Jiri Novotny | Group Stage | UEFA Champions League 97/98 |
| 1 | Petr Gabriel | Group Stage | UEFA Champions League 97/98 |
| 1 | Miroslav Matusovic | Group Stage | UEFA Champions League 05/06 |
| 1 | Martin Petras | Group Stage | UEFA Champions League 05/06 |
| 1 | Lukas Zelenka | Group Stage | UEFA Champions League 04/05 |
| 1 | Tomas Jun | Group Stage | UEFA Champions League 04/05 |
| 1 | Lukas Zelenka | Group Stage | UEFA Champions League 03/04 |
| 1 | Marek Kincl | Group Stage | UEFA Champions League 03/04 |
| 1 | Tomas Jun | Round of 16 | UEFA Champions League 03/04 |
| 1 | Libor Sionko | Group Stage | UEFA Champions League 03/04 |
| 1 | Miroslav Baranek | First Group Stage | UEFA Champions League 99/00 |
| 1 | Martin Prohaszka | First Group Stage | UEFA Champions League 99/00 |
| 1 | Zdenek Svoboda | Second Group Stage | UEFA Champions League 99/00 |
| 1 | Jiri Jarosik | First Group Stage | UEFA Champions League 99/00 |
| 1 | Horst Siegl | Second Group Stage | UEFA Champions League 99/00 |
| 1 | Lukas Hartig | First Group Stage | UEFA Champions League 01/02 |
| 1 | Peter Babnic | First Group Stage | UEFA Champions League 01/02 |
| 1 | Jiri Novotny | First Group Stage | UEFA Champions League 01/02 |
| 1 | Martin Klein | Second Group Stage | UEFA Champions League 01/02 |
| 1 | Vladimir Labant | First Group Stage | UEFA Champions League 01/02 |
| 1 | Radim Holub | First Group Stage | UEFA Champions League 01/02 |
| 1 | Michal Hornak | First Group Stage | UEFA Champions League 00/01 |
| 1 | Vladimir Labant | First Group Stage | UEFA Champions League 00/01 |
