| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Simon Eastwood | Oxford United | England | 66 | |
| 2 | Mark Oxley | Southend United | England | 64 | |
| 3 | Lee Nicholls | Milton Keynes Dons | England | 59 | |
| 4 | George Long | AFC Wimbledon | England | 58 | |
| 5 | Luke McGee | Portsmouth | England | 57 | |
| 6 | Ben Amos | Charlton Athletic | England | 53 | |
| 7 | Tomas Holy | Gillingham | Czech Republic | 52 | |
| 8 | Alex Cairns | Fleetwood Town | England | 51 | |
| 9 | Johny Placide | Oldham Athletic | Haiti | 50 | |
| 10 | Jonathan Bond | Peterborough United | England | 49 | |
| 11 | Josh Lillis | Rochdale | England | 47 | |
| 12 | Colin Doyle | Bradford City | Republic of Ireland | 45 | |
| 13 | Ian Lawlor | Doncaster Rovers | Republic of Ireland | 44 | |
| 14 | Richard O'Donnell | Rotherham United | England | 43 | |
| 15 | Matthew Gilks | Scunthorpe United | Scotland | 43 | |
| 16 | David Raya | Blackburn Rovers | Spain | 40 | |
| 17 | Marek Rodak | Rotherham United | Slovakia | 40 | |
| 18 | Sam Slocombe | Bristol Rovers | England | 34 | |
| 19 | Dean Henderson | Shrewsbury Town | England | 33 | |
| 20 | Adam Smith | Bristol Rovers | England | 32 |
GC = Goals conceded