| Players | Total | Start | Sub | CO | Off | Goals |
|---|---|---|---|---|---|---|
 Tomas Galasek | 31 | 30 | 1 | 1 | 1 | 2 |
Marek Mintal | 31 | 23 | 9 | 8 | 9 | 5 |
Andreas Wolf | 30 | 30 | - | - | 1 | 2 |
Zvjezdan Misimovic | 28 | 23 | 5 | 5 | 7 | 10 |
Ivan Saenko | 26 | 20 | 7 | 6 | 8 | 1 |
Jaromir Blazek | 25 | 25 | 3 | - | 1 | - |
Dominik Reinhardt | 25 | 24 | 1 | 1 | 2 | - |
Angelos Charisteas | 24 | 20 | 7 | 4 | 7 | 6 |
Peer Kluge | 22 | 22 | 2 | - | 7 | 3 |
Marco Engelhardt | 22 | 16 | 9 | 6 | 7 | 1 |
Jaouhar Mnari | 21 | 14 | 13 | 7 | 7 | - |
Javier Pinola | 19 | 19 | - | - | 2 | 1 |
Jan Kristiansen | 19 | 15 | 11 | 4 | 6 | - |
Glauber | 19 | 15 | 7 | 4 | 6 | - |
Robert Vittek | 17 | 13 | 4 | 4 | 7 | 1 |
Jan Koller | 14 | 14 | - | - | - | 2 |
Nicky Adler | 13 | 5 | 10 | 8 | 4 | - |
Michael Beauchamp | 12 | 10 | 6 | 2 | 1 | - |
Joshua Kennedy | 12 | 3 | 9 | 9 | 2 | 1 |
Jacques Abardonado | 10 | 9 | 4 | 1 | - | - |
Daniel Klewer | 10 | 9 | 6 | 1 | - | - |
Ralf Schmidt | 8 | 3 | 9 | 5 | - | - |
Lars Jacobsen | 7 | 6 | 3 | 1 | - | - |
Matthew Spiranovic | 7 | 6 | 9 | 1 | 1 | - |
Dario Vidosic | 4 | - | 5 | 4 | - | - |
Leon Benko | 3 | - | 7 | 3 | - | - |
Chhunly Pagenburg | 1 | - | 2 | 1 | - | - |
Alexander Stephan | - | - | 5 | - | - | - | 460 | 374 | 154 | 86 | 86 | 35 |
Total = Total appearances,
Start = Total started,
CO = Came on,
Sub = Started as a sub,
Off = Taken off .