| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Arran Lee-Barratt | Hartlepool United | England | 70 | |
| 2 | Scott P Brown | Cheltenham Town | England | 65 | |
| 3 | Stephen Phillips | Bristol Rovers | England | 62 | |
| 4 | Joe Murphy | Scunthorpe United | Republic of Ireland | 60 | |
| 5 | Joe Lewis | Peterborough United | England | 57 | |
| 6 | David Forde | Millwall | Republic of Ireland | 52 | |
| 7 | Clayton Ince | Walsall | Trinidad and Tobago | 49 | |
| 8 | Willy Gueret | Milton Keynes Dons | France | 48 | |
| 9 | Ben Williams | Carlisle United | England | 48 | |
| 10 | Chris Dunn | Northampton Town | England | 47 | |
| 11 | Owain Fon Williams | Stockport County | Wales | 45 | |
| 12 | Steve Collis | Crewe Alexandra | England | 44 | |
| 13 | Danny Coyne | Tranmere Rovers | Wales | 40 | |
| 14 | Phil Smith | Swindon Town | England | 40 | |
| 15 | Steve Mildenhall | Southend United | England | 39 | |
| 16 | Josh Wagenaar | Yeovil Town | Canada | 36 | |
| 17 | Glenn Morris | Leyton Orient | England | 35 | |
| 18 | Michel Kuipers | Brighton & Hove Albion | Netherlands | 35 | |
| 19 | Alex Smithies | Huddersfield Town | England | 35 | |
| 20 | Dean Gerken | Colchester United | England | 34 |
GC = Goals conceded