| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Joe Lewis | Peterborough United | England | 77 | |
| 2 | Adam Collin | Carlisle United | England | 64 | |
| 3 | Tony Roberts | Dagenham & Redbridge | Wales | 63 | |
| 4 | David Martin | Milton Keynes Dons | England | 57 | |
| 5 | Nicky Weaver | Sheffield Wednesday | England | 56 | |
| 6 | Robert Elliot | Charlton Athletic | Republic of Ireland | 52 | |
| 7 | Shwan Jalal | AFC Bournemouth | England | 51 | |
| 8 | Ben Williams | Colchester United | England | 50 | |
| 9 | Jamie Jones | Leyton Orient | England | 50 | |
| 10 | David Button | Plymouth Argyle | England | 47 | |
| 11 | Stephen Henderson | Yeovil Town | Republic of Ireland | 45 | |
| 12 | Stuart Nelson | Notts County | England | 44 | |
| 13 | Casper Ankergren | Brighton & Hove Albion | Denmark | 41 | |
| 14 | Scott Flinders | Hartlepool United | England | 40 | |
| 15 | Kelvin Davis | Southampton | England | 38 | |
| 16 | Phil Smith | Swindon Town | England | 38 | |
| 17 | Jimmy Walker | Walsall | England | 37 | |
| 18 | Mikkel Andersen | Bristol Rovers | Denmark | 37 | |
| 19 | Dean Brill | Oldham Athletic | England | 35 | |
| 20 | David Lucas | Swindon Town | England | 34 |
GC = Goals conceded