| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Josh Lillis | Rochdale | England | 72 | |
| 2 | Michael Ingham | York City | Northern Ireland | 63 | |
| 3 | Michael Poke | Torquay United | England | 58 | |
| 4 | Jamie Young | Aldershot Town | Australia | 57 | |
| 5 | Artur Krysiak | Exeter City | Poland | 56 | |
| 6 | Chris Lewington | Dagenham & Redbridge | England | 56 | |
| 7 | Lee Nicholls | Northampton Town | England | 55 | |
| 8 | Scott Davies | Fleetwood Town | England | 54 | |
| 9 | Chris Neal | Port Vale | England | 53 | |
| 10 | Barry Roche | Morecambe | Republic of Ireland | 52 | |
| 11 | Scott P Brown | Cheltenham Town | England | 52 | |
| 12 | Graham Stack | Barnet | Republic of Ireland | 50 | |
| 13 | Paul Smith | Southend United | England | 39 | |
| 14 | Andy Warrington | Rotherham United | England | 37 | |
| 15 | Jake Cole | Plymouth Argyle | England | 36 | |
| 16 | Jordan Archer | Wycombe Wanderers | Scotland | 36 | |
| 17 | Stuart Nelson | Gillingham | England | 36 | |
| 18 | Stuart Tomlinson | Burton Albion | England | 35 | |
| 19 | Ryan Clarke | Oxford United | England | 34 | |
| 20 | Ian Dunbavin | Accrington Stanley | England | 31 |
GC = Goals conceded