| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Barry Roche | Morecambe | Republic of Ireland | 64 | |
| 2 | Scott P Brown | Cheltenham Town | England | 62 | |
| 3 | Matt Duke | Northampton Town | England | 60 | |
| 4 | Trevor Carson | Bury | Northern Ireland | 55 | |
| 5 | Matt Ingram | Wycombe Wanderers | England | 55 | |
| 6 | Ross Worner | AFC Wimbledon | England | 54 | |
| 7 | Steve Mildenhall | Bristol Rovers | England | 54 | |
| 8 | Artur Krysiak | Exeter City | Poland | 53 | |
| 9 | Alan Marriott | Mansfield Town | England | 52 | |
| 10 | Scott Flinders | Hartlepool United | England | 51 | |
| 11 | Ryan Clarke | Oxford United | England | 51 | |
| 12 | Chris Lewington | Dagenham & Redbridge | England | 51 | |
| 13 | Josh Lillis | Rochdale | England | 49 | |
| 14 | Martin Rice | Torquay United | England | 49 | |
| 15 | Sam Slocombe | Scunthorpe United | England | 46 | |
| 16 | Marcos Bettinelli | Accrington Stanley | England | 41 | |
| 17 | Tommy Lee | Chesterfield | England | 40 | |
| 18 | Daniel Bentley | Southend United | England | 40 | |
| 19 | Brian Jensen | Bury | Denmark | 36 | |
| 20 | Scott Davies | Fleetwood Town | England | 34 |
GC = Goals conceded