| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Scott Flinders | Hartlepool United | England | 72 | |
| 2 | Trevor Carson | Cheltenham Town | Northern Ireland | 70 | |
| 3 | Chris Dunn | Cambridge United | England | 60 | |
| 4 | Paul Jones | Portsmouth | England | 55 | |
| 5 | Owain Fon Williams | Tranmere Rovers | Wales | 54 | |
| 6 | James Shea | AFC Wimbledon | England | 47 | |
| 7 | Matt Ingram | Wycombe Wanderers | England | 45 | |
| 8 | Chris Day | Stevenage | England | 44 | |
| 9 | Mark Cousins | Dagenham & Redbridge | England | 42 | |
| 10 | Joe Day | Newport County | England | 41 | |
| 11 | Jon McLaughlin | Burton Albion | Scotland | 40 | |
| 12 | Scott Davies | Morecambe | England | 39 | |
| 13 | Luke McCormick | Plymouth Argyle | England | 37 | |
| 14 | Ryan Clarke | Oxford United | England | 36 | |
| 15 | Dan Hanford | Carlisle United | Wales | 36 | |
| 16 | Daniel Bentley | Southend United | England | 35 | |
| 17 | Christy Pym | Exeter City | England | 34 | |
| 18 | Mark Gillespie | Carlisle United | England | 33 | |
| 19 | James Hamon | Exeter City | England | 32 | |
| 20 | Matt Duke | Northampton Town | England | 32 |
GC = Goals conceded