| # | Players | Clubs | Nationality | GC | More |
|---|---|---|---|---|---|
| 1 | Scott Flinders | York City | England | 79 | |
| 2 | Barry Roche | Morecambe | Republic of Ireland | 78 | |
| 3 | Joe Day | Newport County | England | 62 | |
| 4 | Mark Gillespie | Carlisle United | England | 62 | |
| 5 | Robert Olejnik | Exeter City | Austria | 61 | |
| 6 | Roy Carroll | Notts County | Northern Ireland | 57 | |
| 7 | Alex Cisak | Leyton Orient | Australia | 55 | |
| 8 | Trevor Carson | Hartlepool United | Northern Ireland | 54 | |
| 9 | Artur Krysiak | Yeovil Town | Poland | 47 | |
| 10 | Adam Smith | Northampton Town | England | 47 | |
| 11 | Mark Cousins | Dagenham & Redbridge | England | 41 | |
| 12 | Luke McCormick | Plymouth Argyle | England | 40 | |
| 13 | Liam O'Brien | Dagenham & Redbridge | England | 40 | |
| 14 | Jamie Stephens | Barnet | England | 39 | |
| 15 | Mark Tyler | Luton Town | England | 38 | |
| 16 | Chris Day | Stevenage | England | 33 | |
| 17 | Jason Mooney | Accrington Stanley | Northern Ireland | 33 | |
| 18 | Scott Loach | Notts County | England | 28 | |
| 19 | Brian Jensen | Mansfield Town | Denmark | 28 | |
| 20 | James Shea | AFC Wimbledon | England | 26 |
GC = Goals conceded